Publikationen
2023 |
How mechanobiology orchestrates the iterative and reciprocal ECM-cell cross-talk that drives microtissue growth Benn MC, Pot SA, Moeller J, Yamashita T, Fonta CM, Orend G, Kollmannsberger P, Vogel V |
Multicellular dynamics on 3D scaffolds: Stress concentration is key to controlling complex microtissue morphology on engineered surfaces (Preprint) Matsuzawa R, Matsuo A, Fukamachi S, Takeuchi M, Nishina T, Kollmannsberger P, Sudo R, Okuda S, Yamashita T |
Curvature in Biological Systems: Its Quantification, Emergence, and Implications across the Scales (Review) Schamberger B, Ziege R, Anselme K, Ben Amar M, Bykowski M, Castro APG, Cipitria A, Coles RA, Dimova R, Eder M, Ehrig S, Escudero LM, Evans ME, Fernandes PR, Fratzl P, Geris L, Gierlinger N, Hannezo E, Iglič A, Kirkensgaard JJK, Kollmannsberger P, Kowalewska L, Kurniawan NA, Papantoniou I, Laurent Pieuchot, Pires THV, Renner LD, Sageman-Furnas AO, Schröder-Turk GE, Sengupta A, Sharma VR, Tagua A, Tomba C, Trepat X, Waters SL, Yeo EF, Roschger A, Bidan CM, Dunlop JWC |
Predicting Microenvironment in CXCR4- and FAP-Positive Solid Tumors—A Pan-Cancer Machine Learning Workflow for Theranostic Target Structures Marquardt A, Hartrampf P, Kollmannsberger P, Solimando AG, Meierjohann S, Kübler H, Bargou R, Schilling B, Serfling SE, Buck A, Werner RA, Lapa C, Krebs M |
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2022 |
Single-molecule fluorescence microscopy demonstrates fast dynamics of the variant surface glycoprotein coat on living trypanosomes (Preprint) Schwebs M, Paul T, Glogger M, Forster L, Morriswood B, Teßmar J, Groll J, Engstler M, Kollmannsberger P, Fenz S |
Endogenous tagging of Unc-13 reveals nanoscale reorganization at active zones during presynaptic homeostatic potentiation Dannhäuser S, Mrestani A, Gundelach F, Pauli M, Komma F, Kollmannsberger P, Sauer M, Heckmann M, Paul MM |
ReCSAI: recursive compressed sensing artificial intelligence for confocal lifetime localization microscopy Reinhard S, Helmerich DA, Boras D, Sauer M, Kollmannsberger P |
Ultrastructural analysis of wildtype and RIM1α knock-out active zones in a large cortical synapse Lichter K, Paul M, Pauli M, Schoch S, Kollmannsberger P, Stigloher C, Heckmann M, Siren A-L |
Visual Clustering of Transcriptomic Data from Primary and Metastatic Tumors–Dependencies and Novel Pitfalls Marquardt A, Kollmannsberger P, Krebs M, Knott M, Solimando AG, Kerscher A |
Detecting ice artefacts in processed macromolecular diffraction data with machine learning Nolte K, Gao Y, Stäb S, Kollmannsberger P, Thorn A |
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2021 |
Fourier Ring Correlation and anisotropic kernel density estimation improve deep learning based SMLM reconstruction of microtubules Berberich A, Kurz A, Reinhard S, Paul TJ, Burd PR, Sauer M, Kollmannsberger P |
Active zone compaction correlates with presynaptic homeostatic potentiation Mrestani A, Pauli M, Kollmannsberger P, Repp F, Kittel RJ, Eilers J, Doose S, Sauer M, Sirén AL, Heckmann M, Paul MM |
Structural analysis of the C. elegans dauer larval anterior sensilla by Focused Ion Beam-Scanning Electron Microscopy Britz S, Markert SM, Witvliet D, Steyer AM, Troeger S, Mulcahy B, Kollmannsberger P, Schwab Y, Zhen M, Stigloher C |
Defining the Basis of Cyanine Phototruncation Enables a New Approach to Single Molecule Localization Microscopy Matikonda S, Helmerich D, Meub M, Beliu G, Kollmannsberger P, Greer A, Sauer M, Schnermann M |
Identifying New Potential Biomarkers in Adrenocortical Tumors Based on mRNA Expression Data Using Machine Learning Marquardt A, Landwehr LS, Ronchi CL, Dalmazi G, Riester A, Kollmannsberger P, Altieri B, Fassnacht M, Sbiera S |
Targeted volumetric single-molecule localization microscopy of defined presynaptic structures in brain sections Pauli M, Paul MM, Proppert S, Sharifi M, Repp F, Kollmannsberger P, Sauer M, Heckmann M, Siren AL |
Subgroup-independent mapping of renal cell carcinoma–machine learning reveals prognostic mitochondrial gene signature beyond histopathologic boundaries Marquardt A, Solimando AG, Kerscher A, Bittrich M, Kalogirou C, Kübler H, Rosenwald A, Bargou R, Kollmannsberger P, Schilling B, Meierjohann S, Krebs M |
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2020 |
DeepCLEM: automated registration for correlative light and electron microscopy using deep learning (Preprint) Seifert R, Markert SM, Britz S, Perschin V, Erbacher C, Stigloher S, Kollmannsberger P |
Biological network growth in complex environments: a computational framework Paul TJ, Kollmannsberger P PLOS Computational Biology, 16(11), e1008003 (2020) Code |
Haruspex: A Neural Network for the Automatic Identification of Oligonucleotides and Protein Secondary Structure in Cryo‐EM Maps Mostosi P, Schindelin H, Kollmannsberger P, Thorn A |
Efficient Classification of White Blood Cell Leukemia with Improved Swarm Optimization of Deep Features Sahlol AT, Kollmannsberger P, Ewees AA |
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2019 |
Electron tomography of mouse LINC complexes at meiotic telomere attachment sites with and without microtubules Spindler MC, Redolfi J, Helmprobst F, Kollmannsberger P, Stigloher C, Benavente R |
Surface tension determines tissue shape and growth kinetics Ehrig S, Schamberger B, Bidan CM, West A, Jacobi C, Lam K, Kollmannsberger P, Petersen A, Tomancak P, Kommareddy K, Fischer FD, Fratzl P, Dunlop JWC |
Towards a connectomic description of the osteocyte lacunocanalicular network in bone (Review) Weinkamer R, Kollmannsberger P, Fratzl P |
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2018 |
Automated classification of synaptic vesicles in electron tomograms of C. elegans using machine learning Kaltdorf KV, Theiss M, Markert SM, Zhen M, Dandekar T, Stigloher C, Kollmannsberger P |
Tensile forces drive a reversible fibroblast-to-myofibroblast transition during tissue growth in engineered clefts Kollmannsberger P, Bidan CM, Dunlop JWC, Fratzl P, Vogel V. |
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2017 |
Coalignment of osteocyte canaliculi and collagen fibers in human osteonal bone Repp F, Kollmannsberger P, Roschger A, Berzlanovich A, Gruber GM, Roschger P, Wagermaier W, Weinkamer R |
The Small World of Osteocytes: Connectomics of the Lacuno-Canalicular Network in Bone Kollmannsberger P, Kerschnitzki M, Repp F, Wagermaier W, Weinkamer R, Fratzl P |
Spatial heterogeneity in the canalicular density of the osteocyte network in human osteons Repp F, Kollmannsberger P, Roschger A, Kerschnitzki M, Berzlanovich A, Gruber GM, Roschger P, Wagermaier W, Weinkamer R |
FIJI Macro 3D ART VeSElecT: 3D Automated Reconstruction Tool for Vesicle Structures of Electron Tomograms Kaltdorf KV, Schulze K, Helmprobst F, Kollmannsberger P, Dandekar T, Stigloher C |
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2016 |
How type 1 fimbriae help Escherichia coli to evade extracellular antibiotics Avalos Vizcarra I, Hosseini V, Kollmannsberger P, Meier S, Weber SS, Arnoldini M, Ackermann M, Vogel V |
Cell sheet mechanics: How geometrical constraints induce the detachment of cell sheets from concave surfaces Yamashita T, Kollmannsberger P, Mawatari K, Kitamori T, Vogel V |
Gradual conversion of cellular stress patterns into pre-stressed matrix architecture during in vitro tissue growth Bidan CM, Kollmannsberger P, Gering V, Ehrig S, Joly P, Petersen A, Vogel V, Fratzl P, Dunlop JWC |
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pre-2016 |
Foolen J, Yamashita T, Kollmannsberger P, Shaping tissues by balancing active forces and geometric constraints. Journal of Physics D: Applied Physics. 49, 053001 (2015) (Peer-Reviewed Review) |
Hosseini V, Kollmannsberger P, Ahadian S, Ostrovidov S, Kaji H, Vogel V, Khademhosseini A, Fiber-Assisted Molding (FAM) of Surfaces with Tunable Curvature to Guide Cell Alignment and Complex Tissue Architecture. Small 10(23) 4851-4857 (2014) |
Möller J, Emge P, Avalos Vizcarra I, Kollmannsberger P, Vogel V, Bacterial filamentation accelerates colonization of adhesive spots embedded in biopassive surfaces. New Journal of Physics 15 125016 (2013) |
Lukas C, Ruffoni D, Lambers FM, Schulte FA, Kuhn G, Kollmannnsberger P, Weinkamer R, Müller R, Mineralization kinetics in murine trabecular bone quantified by time-lapsed in vivo micro-computed tomography. Bone 56(1) 55-60 (2013) |
Kerschnitzki M*, Kollmannsberger P*, Burghammer M. Duda GN, Weinkamer R, Wagermaier W, Fratzl P, Architecture of the osteocyte network correlates with bone material quality. Journal of Bone and Mineral Research 28(8) 1837-1845 (2013) |
Bidan CM, Kommareddy KP, Rumpler M, Kollmannsberger P, Fratzl P, Dunlop JWC, Geometry as a Factor for Tissue Growth: Towards Shape Optimization of Tissue Engineering Scaffolds. Advanced Healthcare Materials 2(1) 186-194 (2013) |
Bidan CM, Kommareddy KP, Rumpler M, Kollmannsberger P, Bréchet YJM, Fratzl P, Dunlop JWC, How Linear Tension Converts to Curvature: Geometric Control of Bone Tissue Growth. PLOS one 7(5): e36336 (2012) |
Lukas C, Kollmannsberger P, Ruffoni D, Roschger P, Fratzl P, Weinkamer R, The Heterogeneous Mineral Content of Bone-Using Stochastic Arguments to Overcome Experimental Limitations. Journal of Statistical Physics 144(2) 316-331 (2011) |
Kollmannsberger P*, Bidan CM*, Dunlop JWC, Fratzl P, The physics of tissue patterning and extracellular matrix organisation: How cells join forces. Soft Matter 7, 9549-9560 (2011) (Peer-Reviewed Review) |
Kollmannsberger P, Fabry B, Linear and Nonlinear Rheology of Living Cells. Annual Review of Materials Research 41, 75-97 (2011) (Peer-Reviewed Review) |
Kollmannsberger P, Mierke CT, Fabry B, Nonlinear viscoelasticity of adherent cells is controlled by cytoskeletal tension. Soft Matter 7, 3127-3132 (2011) |
Mierke CT, Kollmannsberger P, Zitterbart DP, Diez G, Koch TM, Marg S, Ziegler WH, Goldmann WH, Fabry B, Vinculin Facilitates Cell Invasion into Three-dimensional Collagen Matrices. Journal of Biological Chemistry 285, 13121-13130 (2010) |
Kollmannsberger P, Fabry B, Active soft glassy rheology of adherent cells. Soft Matter 5, 1771-1774 (2009) |
Lorenz C, Brunner JG, Kollmannsberger P, Jaafar L, Fabry B, Virtanen S, Effect of surface pre-treatments on biocompatibility of magnesium. Acta Biomateralia 5, 2783-2789 (2009) |
Diez G, Kollmannsberger P, Mierke CT, Koch TM, Vali H, Fabry B, Goldmann WH, Anchorage of Vinculin to Lipid Membranes Influences Cell Mechanical Properties. Biophysical Journal 97, 3105-3112 (2009) |
Kasza KE, Nakamura F, Hu S, Kollmannsberger P, Bonakdar N, Fabry B, Stossel TP, Wang N, Weitz DA, Filamin A Is Essential for Active Cell Stiffening but not Passive Stiffening under External Force. Biophysical Journal 96, 4326-4335 (2009) |
Rosel D, Brabek J, Tolde O, Mierke CT, Zitterbart DP, Raupach C, Bicanova K, Kollmannsberger P, Pankova D, Vesely D, Fabry B, Up-regulation of Rho/ROCK signaling in sarcoma cells drives invasion and increased generation of protrusive forces. Molecular Cancer Research 6 (2008) |
Mierke CT, Zitterbart DP, Kollmannsberger P, Raupach C, Schlötzer-Schrehardt U, Goecke TW, Behrens J, Fabry B, Breakdown of the endothelial barrier function in tumor cell transmigration. Biophysical Journal 94, 2832-2846 (2008) |
Mierke CT*, Kollmannsberger P*, Zitterbart DP, Smith J, Fabry B, Goldmann WH, Mechanocoupling and regulation of contractility by the vinculin tail domain. Biophysical Journal 94, 661-670 (2008) |
Kollmannsberger P, Fabry B, High-force magnetic tweezers with force feedback for biological applications. Reviews of Scientific Instruments 78, 114301. (2007) |